Peptide content is the number that tells you how much drug is in the vial. Almost nobody sells it, almost nobody buys it, and when we paid for it on nine vials the results were not reassuring.
Edinburgh·17 September 2024 1,176 words · 5 min read
Editor’s note
This article was updated to add the explanation of why a preparation can be chromatographically pure and substantially non-peptide, following correspondence which made clear the original text assumed the reader already understood it.
A vial labelled 5 mg contains, in the ordinary case, rather less than 5 mg of peptide. This is not fraud and it is not usually even a discrepancy. A lyophilised peptide is supplied as a salt — most commonly a trifluoroacetate or an acetate — and the counter-ion contributes mass. So does residual water, which a hygroscopic powder acquires readily, and so does residual solvent that lyophilisation did not fully remove. A vial can be 99% pure by chromatography and 82% peptide by mass, and both statements can be true of the same powder at the same time.
The number that resolves this is peptide content: the fraction of the vial’s contents that is actually peptide. It is determined most commonly by elemental nitrogen analysis, sometimes by quantitative amino-acid analysis, occasionally by chromatography against a certified reference standard. All three cost meaningfully more than a purity run, and none of the twenty companies in the Journal’s dossier programme reports content as a standard release test.
Nine vials
Between March and July we submitted nine vials from six suppliers for nitrogen determination. Every vial was labelled with a nominal mass. Every supplier had provided a purity figure above 97%. We asked one question: how much peptide is in there?
Peptide content by nitrogen determination, nine vials, six suppliers
Vial
Label
Stated purity
Content (% of label)
Peptide mass
A
5 mg
99.2%
96%
4.80 mg
B
5 mg
98.8%
92%
4.60 mg
C
10 mg
99.0%
90%
9.00 mg
D
10 mg
98.1%
98%
9.80 mg
E
5 mg
97.6%
84%
4.20 mg
F
5 mg
99.4%
95%
4.75 mg
G
15 mg
98.5%
93%
13.95 mg
H
10 mg
98.9%
81%
8.10 mg
I
5 mg
98.2%
94%
4.70 mg
Content determined by elemental nitrogen analysis at a single accredited laboratory, expressed as a percentage of the labelled nominal mass. Individual determinations carry an uncertainty of roughly ±3% relative.
The median was 93% of label. Two vials were below 85%. The vial with the highest stated purity in the set — 99.4% — returned 95% content, and the vial with the lowest stated purity returned 98%. There is no relationship between the two numbers in this dataset, and there is no reason there should be: they measure different things.
Figure. Peptide content as a percentage of labelled mass, nine vials. The dashed expectation line at 100% is where a buyer doing arithmetic with the label would assume they were.
Why this matters more than purity
A 2% impurity burden in a research peptide is, in most realistic scenarios, a smaller problem than a 16% content shortfall. The impurities in a well-made peptide preparation are overwhelmingly closely related species — deletion sequences, deamidated forms, oxidised methionine — present at fractions of a per cent each. A content shortfall, by contrast, propagates directly into every calculation the user performs.
Work the arithmetic. A vial labelled 5 mg, reconstituted with 2 mL of bacteriostatic water, is assumed to hold 2.5 mg per mL. On a 100-unit insulin syringe, 20 units is 0.2 mL and therefore, on that assumption, 0.5 mg. If the vial actually contains 4.2 mg — the worst case in our set — then the same 20 units delivers 0.42 mg, sixteen per cent less than intended. Nothing about the appearance of the solution, the label, or the purity certificate would reveal it.
A 2% impurity burden is a smaller problem than a 16% content shortfall. Only one of the two is on the certificate.
What the suppliers said
We put each result to the supplier concerned. Six of the six responded, which is a better rate than we expected. Two accepted the finding without qualification and one of those has since begun reporting content on its certificates. Three argued, reasonably, that content is not a specification they publish and that the nominal mass on the label refers to the mass of material filled rather than the mass of peptide — which is true, is standard practice in the research-chemical trade, and is not what any buyer assumes.
The sixth disputed the method, arguing that nitrogen determination overstates non-peptide nitrogen in preparations containing certain excipients. That is a legitimate objection in general and did not apply to the vial in question, which contained no excipient. We said so; the company did not respond further.
The counter-ion question
Trifluoroacetic acid is used ubiquitously in peptide purification, and TFA salts of basic peptides can carry a substantial counter-ion fraction — for a peptide with several basic residues, ten to twenty per cent of the total mass is not unusual. Acetate salts carry less. Some manufacturers perform a salt exchange specifically to reduce residual TFA, and a certificate that reports the salt form and the counter-ion content is telling you something genuinely useful about the mass in the vial.1
Two of the twenty suppliers we track report the salt form. None reports counter-ion content as standard. One will report it on request, at additional cost, on a four-week turnaround.
What it costs to know
This is the part of the story that explains the rest of it. A purity run on a generic method costs a private buyer a low three-figure sum. A nitrogen determination costs roughly two and a half to three times as much. Quantitative amino-acid analysis costs more again. A full characterisation package — identity by mass spectrometry, purity by two orthogonal gradients, content, water, counter-ion and residual solvent — was quoted to us by one supplier at approximately 2.4 times the catalogue price of the vial itself.
That figure is the market price of knowing what you have, and the fact that almost nobody pays it is the whole explanation for why the trade competes on purity. Purity is what you get for a hundred euros. Content is what you would need.
The Journal’s position is not that every buyer should commission a full characterisation package. It is that the label mass of a research vial is an upper bound rather than a value, that the median shortfall in our small sample was seven per cent and the worst was nineteen, and that anybody performing arithmetic with a nominal mass should know which of those they are doing.
Note
The compounds described here are sold for research use only and are not approved for human use in any jurisdiction. This article reports analytical findings; it is not guidance on preparing or administering anything.
References
Andrushchenko VV, Vogel HJ, Prenner EJ. “Optimization of the hydrochloric acid concentration used for trifluoroacetate removal from synthetic peptides.” Journal of Peptide Science. 2007;13(1):37–43. ↩
Letters to the Editor
3 printed
Selected from correspondence received on this article. Writers are identified by initial, surname and city, verified before printing. Replies are from the desk that filed the piece or from the standards editor. Write to letters@journalcompound.com.
I have been buying research peptides for six years and I did not know that the label mass referred to fill mass rather than peptide mass. I have recalculated three years of notes this week. Thank you, I think.
— T. Elorriaga, San Sebastián
The Journal replies
You are not unusual in that, which is the reason we ran the piece.
Your table gives vial H at 81% content with 98.9% stated purity. Those two numbers together imply nearly a fifth of the vial is something other than peptide and yet almost none of it shows up chromatographically. Can you explain the mechanism rather than just reporting it?
— M. Delgado-Rios, Córdoba
The Journal replies
Water, counter-ion and residual solvent — none of which absorb usefully at 214 nm and none of which are integrated as peaks. Chromatographic purity is calculated on the peptide-derived signal only, so a vial can be simultaneously very pure and largely not peptide. It is the single most consequential thing the two numbers together tell you, and we should have spelled it out in the article rather than in a reply.
As a matter of fairness: the supplier that started reporting content after you contacted them deserves to be named. You name people when they behave badly.
— A. Basaraba, Winnipeg, MB
The Journal replies
A fair point. It is Shanghai Sigma-Audley, and the change appeared on certificates from the following quarter.
The absence of microbiological capability in this market is a commercial fact with a straightforward explanation, and it is worth understanding before blaming anybody for it.
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